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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgttttgtctggcaagatactgtcatccaatatatggcatcatggaaataaacatctatgaacagttctgtttgtttcaaatatccttcctgtgtcagATCATATTGCTTATTCTGGTCGTCAATGGAGTTCTAGTAGCAAAGGTCTTGGCCACTCAAGGTCATATAGTAGTTCTGAGAGAAGCTGGCAGGATACAGA

Basic information

species Glycine max
transcript GLYMA05G25260.1
intron # 2
splice site 3'
intron type U12 (go to U12 genes for details)


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaataaacatctatgaacagttctgtttgtttcaaatatccttcctgtgtcagATCATATTGCTTATTCTGGTCGTCAATGGAGTTCTAGTAGCAAAGGTCTTGGCCACTCAAGGTCATATAGTAGTTCTGAGAGAAGCTGGCAGGATACAGA
                                       atccttcct  putative branch site 
                                      tatccttcct  CT-rich tract
                           tttgtttcaaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatgttttgtctggcaagatactgtcatccaatatatggcatcatggaaataaacatctatgaacagttctgtttgtttcaaatatccttcctgtgtcagATCATATTGCTTATTCTGGTCGTCAATGGAGTTCTAGTAGCAAAGGTCTTGGCCACTCAAGGTCATATAGTAGTTCTGAGAGAAGCTGGCAGGATACAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- tgttttg
- - - - - - - - -gatactg
- - - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - -catcatg
- - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac