1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgattttgtttttggttatatggtgtttcttgtactactgcattcagttcttgtgagatttttgtcttaccttctgagatcttcaacatcattttgcagATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCT
species | Glycine max |
transcript | GLYMA05G22250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAG ATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATTEST: gi|11412767|gb|BF424778.1|BF424778
genomic: GCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAGgtgacatttt ... cattttgcagATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATT
EST: GCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAG ATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATTEST: gi|254326806|gb|GR836415.1|GR836415
genomic: GCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAGgtgacatttt ... cattttgcagATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATT
EST: GCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAG ATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATT
genomic: GCAATGAGCGTTGTATAATCAAGATTCTTAAGCCTGTCAAGAAAAAGAAGgtgacatttt ... cattttgcagATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATT
cagttcttgtgagatttttgtcttaccttctgagatcttcaacatcattttgcagATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCT
gtcttac putative branch site (score: 3)
tcatttt putative PPT
agattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgattttgtttttggttatatggtgtttcttgtactactgcattcagttcttgtgagatttttgtcttaccttctgagatcttcaacatcattttgcagATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCACTCTAAAACTCCTAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - -tatggtg
- - - - - - - - - - - - - - -cttgtac
- - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - -tcttgtg