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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

Basic information

species Glycine max
transcript GLYMA05G21370.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g60790.1 (Oryza sativa), 3'ss of exon 2
gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatt---tcaaattttcaattaacct-----tttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
|| |    | |      |  | |  | ||  ||   | |  | ||||||||     |  |  | |   || |  |     | | ||||      | |  |||||||||||| |||||||||||||  ||||||||||| || || ||||| ||  |||| || || ||||| || || ||  | ||  
gtaa--ggcgaagcgaatccccttttgccctctctcgttgcgcgcgaggcacccactggatctctgtgttgatttgggaatctttgctttgggtgcgggacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
------------------------------gttattatc-tatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
                              ||||||||| |    ||  || || ||   ||    | || || |        ||      |||  |    |||  ||  |||||  ||    ||||||||||||||||||||||| |  ||||||||||| || || ||||| ||  |||| ||||| ||||| || || ||| ||||  
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcg-aaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcg--caggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G899149_T01 (Zea mays), 3'ss of exon 2
---gttattatctatttcgctttcttccttccacc----ttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
   | |   |  | |||  ||| | |     ||       | |  ||||  |    |  |  |  || |  |   |  | |  || | ||         ||||| ||||| |||||| ||||  | ||||||||||||||||| |||||||| || |||||||||||||| ||||||||  ||||  
tgtgctcagacatgtttgacttgcattgcaacattagaacttaattttgctctgaactgtgtatgttgtagaa-gatatatgatgtttgctgtacttg-cagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCCGTGAGAGATGTGCAGGAGGCCTGTGTACATGATG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G827266_T02 (Zea mays), 3'ss of exon 2
gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
           |   |   |    |  |   |  |    || | |    ||||| |    |    |  |    |||  || |   |  |  |||||||||||| |||||||||||||  ||||||||||| || |||||||| ||  |||| || || |||||||| || ||||||||  
----------gtgaggagatgcctccacagtcgcctttctttttctcttcattt-acccgtgtggtggagtccttgatcttgatgctcgttacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM5G827266_T03 (Zea mays), 3'ss of exon 2
gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC-----
           |   |   |    |  |   |  |    || | |    ||||| |    |    |  |    |||  || |   |  |  |||||||||||| |||||||||||||  ||||||||||| || |||||||| ||  |||| || || |||||||| || ||||||||       
----------gtgaggagatgcctccacagtcgcctttctttttctcttcattt-acccgtgtggtggagtccttgatcttgatgctcgttacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATGGTAAA

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G129015_T02 (Zea mays), 3'ss of exon 2
-------gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
       | |||| |    | || |    |  ||   |      || |||   |    ||    |   |  || |  | || |  ||            ||||| ||||| |||||| ||||  | ||||||||||||||||| |||||||| || || || |||||||| ||||||||  ||||  
gttcttggatattttgacctgcgttgcaatatttgggctcaattatctgtcgaaactgttgtggaaaatgtatga--cgttggcactattttttactcgcagGATAAGGCTATCAAGCGGTTCTTGGTGAGGAACATTGTTGAGCAGGCTGCTGTGAGGGACGTGCAGGAGGCCTGTGTGCATGATG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 2
gttattatctatttcgctttcttccttccacct-tcagatttgtgcgaggcattt-caaattttcaattaaccttttg-tgctcgccccgtga-----aacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
    |  ||| |||| | ||||    || | |  |||   |   |  |  | | |    ||||| | || | ||| || || |       | |      | ||||||||||||| ||||||||  |||||||||||||||| || ||||||||  | |||||||| ||||||||  | ||||||||  
---gtactctctttcaccttctcttctcaatcaatcaatctccagtaattcttatgtgtattttgatttgatcttgtggtggttctataataatttgggatagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT2G40590.1 (Arabidopsis thaliana), 3'ss of exon 2
gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaa-----acagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
  || | |||   ||  | |||||      |  |||   |   |  |  | | |     |||  ||||   | ||||| | |     | ||     | ||||||||||||| ||||||||  |||||||||||||||| || ||||||||  | |||||||| ||||||||  | ||||||||  
-gtactctcttcctccttctcttctccaatcaatcaatctccagtaactcctatgtggattttgattaga-tcttgtggtggtaatataaatttggatagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: AT3G56340.1 (Arabidopsis thaliana), 3'ss of exon 2
gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattt-tcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
|||  | |||  | |    || |  | ||   |  ||||||||   | | |||  |||| | || ||     ||| |  |||     |    | |||||||||| || ||||| ||| | || |||||||||||||| ||||||||  | |||||||| || |||||  | ||||| ||| 
gttcat-tctcctacataatcatt-tcccggttctagatttgtcttaag-attgaaaatgtatcgatctggttttggctctcttgttg----atagGACAAGGCGATTAAGAGATTTATCGTAAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCTACGAAG

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 3'ss of exon 3
gttattatctatttcgctttcttccttccaccttcagatttgtg-cgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
       |||   ||  ||| |    |         | |||||  | | |||  |||    || ||||      |  |         ||||  ||||||||||| |||||||||||| | ||||||||||| || || || |||||||| || ||||| ||||| ||||| ||||||||  
------gtctcgctccatttgtattctgatttagtggttttgtatcaaagca--tcagtagttgaattggtgcgtgtttggaattgtgtgat-cagGACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACA

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv06s0004g07940.t01 (Vitis vinifera), 3'ss of exon 2
---------gttattatctatttcgcttt---cttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
         ||| | | | | |     |    |||  ||     ||   |||  ||  |  | ||  | |       ||  |   ||||  |      || |||  |||||| || || ||||||||||| |||||||||||||| || || ||||| ||  | |||||||| ||||| ||||| |||||  
ttccaatgtgttgtcaaccactaaaaatgaaacttagttttgttttgtaattgatggaaacccttaaaga-----ggttgtctccttgttgtgattatgttaaa--gGACAAAGCTATTAAGAGGTTTCTGGTGAGGAACATTGTGGAGCAAGCTGCTGTTCGTGATGTGCAAGAAGCTTGTGTTTATGATA

upper sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S169_19V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------------------gttattatcta--tttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaatt-----ttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
                                                                ||||  |   |  | |||    || |  || | || ||  | ||||| |    | ||| |||     ||  | |  |   |  |    |     |    |||||||||||| | ||| ||||| | ||| | ||||||||||| |||||||| ||| | |||||||| ||||| || || || ||  
gttgccgtgctcctaaacagtttttagacttccgttgcaataatgtgtcgtaattggctgatcagttaagaatcaggtgtcgtaaactactgtcaaact-caagtatgtgccatttttatcacattaggatttagaatcgctgatcattggtgttgaattttgcagGACAAGGCCGTGAAGCGGTTTTTGGTGCGTAACATTGTTGAGCAGGCTGCTGTCCGTGATGTGCAAGAAGCTTGCGTATACGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269126|gb|BM885382.1|BM885382
EST:     GCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|6070885|gb|AW100272.1|AW100272
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|192326591|gb|FK018838.1|FK018838
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|298198055|gb|HO039594.1|HO039594
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|7285735|gb|AW598222.1|AW598222
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAATAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|26058129|gb|CA801043.1|CA801043
EST:     AATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCTCG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: AATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|9205491|gb|BE331715.1|BE331715
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|31465608|gb|CD407636.1|CD407636
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|10238902|gb|BE807798.1|BE807798
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|151411510|gb|EV281321.1|EV281321
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|298192759|gb|HO033193.1|HO033193
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|31466786|gb|CD408814.1|CD408814
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|298183541|gb|HO028754.1|HO028754
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|298182602|gb|HO031337.1|HO031337
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|298162975|gb|HO011708.1|HO011708
EST:     GCCATGTCAAATTCATCCGATGCTCCAACCGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|17023090|gb|BM094124.1|BM094124
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|192296480|gb|FG992316.1|FG992316
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|298197741|gb|HO045220.1|HO045220
EST:     GCCACGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|4405733|gb|AI507882.1|AI507882
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|298163646|gb|HO012379.1|HO012379
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|31474104|gb|CD416132.1|CD416132
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
EST: gi|21601683|gb|BQ612014.1|BQ612014
EST:     GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA
genomic: GCCATGTCAAATTCATCCGATGCTCCAACTGCGGCAAATGCTGCCCCAAGgttattatct ... cgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC
                       aattaac  putative branch site (score: 2)
                                      ctcgcccc  putative PPT
          atttcaaattttcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttattatctatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG