1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaactaacatcttcattgggcataattattgtcatagactcatggttttgtatggcttggtccattttttggtgttcttaacataattacatctttgttgctaatggtaaagatttggttttatttattttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG
species | Glycine max |
transcript | GLYMA05G20940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACEST: gi|208178246|gb|GD976533.1|GD976533
genomic: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
EST: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACEST: gi|33389247|gb|CA852454.1|CA852454
genomic: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
EST: ATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG CGCTATGATGTAAAGAGAGCACCACCAGNAAATCACAAGCCTTTCAGAGGAEST: gi|58014302|gb|CX701044.1|CX701044
genomic: ATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAG-AAATCACAAGCCTTTCAGAGGA
EST: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
genomic: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
aattacatctttgttgctaatggtaaagatttggttttatttattttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG
tgctaat putative branch site (score: 2)
tttattttactttt putative PPT
taaagatttggtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaactaacatcttcattgggcataattattgtcatagactcatggttttgtatggcttggtccattttttggtgttcttaacataattacatctttgttgctaatggtaaagatttggttttatttattttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA