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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggtccatctttcatgtcatgtactcctaaagttgagaaagatcattctgctcatcttttgtatttgacatacatattggtcacagACAGGATCTGGGAAAACATATACCATGGGAACTGGCTATAATGACAATTGTCGGAGCGGATTAATTCCTCAGGTTATGAATGCCTTTTTCAACAAGATTG

Basic information

species Glycine max
transcript GLYMA05G15750.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G15750.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S237_18V6.1 (Physcomitrella patens), 3'ss of exon 2
----------gttaggtccatct-ttcatgtcatgtactcctaaagttgagaaagatcattc---tgctcatcttttgtatttgacatacatattggtcacagACAGGATCTGGGAAAACATATACCATGGGAACTGGCTATAATGACAATTGTCGGA---GCGGATTAATTCCTCAGGTTATGAATGCCTTTTTCAACAAGATTG
          || ||  |||    |||   | |  ||    ||  ||   |||  ||  |||   || | |    | |  || |   | |   ||  || |||||||||||||||||||| || ||||||||||||||||| |  |      |  | |     ||  | || || || |||||| |  |  |||| || |  |   
actaacgtgagtgagtcccaagaattcgattgacttaaatatag-gtcaggaattatatttcatgtgtttactcgtggcgttcgttttcct--ttcatcgcagACAGGATCTGGGAAAACTTACACCATGGGAACTGGCTACACAGTTGGAGGCAGCACTGATGGGGTCATACCACAAGTTATGCAGACAATTTTTAAGAGAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633909|gb|DW247272.1|DW247272
EST:     CTTGCCTATGGTCGG                         ACAGGATCTGGGAAAACATATACCATGGGAACTGGCTATAATGACAATTGT
genomic: CTTGCCTATGGTCAGgttaggtcca ... ttggtcacagACAGGATCTGGGAAAACATATACCATGGGAACTGGCTATAATGACAATTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagaaagatcattctgctcatcttttgtatttgacatacatattggtcacagACAGGATCTGGGAAAACATATACCATGGGAACTGGCTATAATGACAATTGTCGGAGCGGATTAATTCCTCAGGTTATGAATGCCTTTTTCAACAAGATTG
                               atttgac  putative branch site (score: 4)
                         ttttgtattt  TA-rich tract