Sequence
atgc intronic sequence ATGC exonic sequence...agataaaagtttagttcattttacctttttattttcttctacttgatagagcggtgtaatcaaacaggattttattgactaacgtttttccttgtcacagGAGATGGAGAGGGCATTGCCATCAGTTCCACCACCTGAGCCTAAGCCTAAGCATCAGCTTCGCAGAACTAGTTCAGCCATCTTTTGATATCTTAATTGCA
Basic information
species | Glycine max |
transcript | GLYMA05G13890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51336483|gb|CO980349.1|CO980349EST: TTAAAGTTTCACGATTAGAAGAGGAGAATGAAAGGCTTAGAAGACTGAAT GAGATGGAGAGGGCATTGCCATCAGTTCCACCACCTGAGCCTAAGCCTAAG
genomic: TTAAAGTTTCACGATTAGAAGAGGAGAATGAAAGGCTTAGAAGACTGAATgtatgtttct ... cttgtcacagGAGATGGAGAGGGCATTGCCATCAGTTCCACCACCTGAGCCTAAGCCTAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atagagcggtgtaatcaaacaggattttattgactaacgtttttccttgtcacagGAGATGGAGAGGGCATTGCCATCAGTTCCACCACCTGAGCCTAAGCCTAAGCATCAGCTTCGCAGAACTAGTTCAGCCATCTTTTGATATCTTAATTGCA
gactaac putative branch site (score: 1)
cgtttttccttgtc CT-rich tract
attttattgactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agataaaagtttagttcattttacctttttattttcttctacttgatagagcggtgtaatcaaacaggattttattgactaacgtttttccttgtcacagGAGATGGAGAGGGCATTGCCATCAGTTCCACCACCTGAGCCTAAGCCTAAGCATCAGCTTCGCAGAACTAGTTCAGCCATCTTTTGATATCTTAATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
agataaaa
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