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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtcaatatctgttctttcattaattttgcattctatgcaagcaacaattgttcaccaagcttttttagtatatcctgattacttttctgactcttctatataaagggagtatttattaatttctgttttgcatgtaatgcataccaagaagtgtaaagcaaagcttaattactgtttctctatagGTTGCAGGGGGCCGGTTTCAATGCTCAACAACTTGCTATTGTTTCT

Basic information

species Glycine max
transcript GLYMA05G11200.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37996904|gb|CF808493.1|CF808493
EST:     CTATATGAGAAAGAATTTCTGACAGAGAACTCCTATCTTCATATATATGG                         GTTGCAGGGGGCCGGTTTCAATGCTCAACAACTTGCTATTGTTTCT
genomic: CTATATGAGAAAGAATTTCTGACAGAGAACTCCTATCTTCATATATATGGgttcgtcaat ... ttctctatagGTTGCAGGGGGCCGGTTTCAATGCTCAACAACTTGCTATTGTTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtaatgcataccaagaagtgtaaagcaaagcttaattactgtttctctatagGTTGCAGGGGGCCGGTTTCAATGCTCAACAACTTGCTATTGTTTCT
                                gcttaat  putative branch site (score: 4)
                                         ctgtttctct  putative PPT
                                  ttaattact  TA-rich tract