1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaaaaacttaatatttttataattgtatattctacgatgtttctatacagaggaggggcaatcgagtttatttgtaacgttctatataatttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGGGAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATG
species | Glycine max |
transcript | GLYMA05G09460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAG GTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGEST: gi|7685757|gb|AW756405.1|AW756405
genomic: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttata ... tttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
EST: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAG GTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGEST: gi|120495545|gb|EH223712.1|EH223712
genomic: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttata ... tttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
EST: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAG GTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
genomic: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttata ... tttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
atacagaggaggggcaatcgagtttatttgtaacgttctatataatttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGGGAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATG
ttgtaac putative branch site (score: 2)
ttctatataatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaaacttaatatttttataattgtatattctacgatgtttctatacagaggaggggcaatcgagtttatttgtaacgttctatataatttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGGGGAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
-gaaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - ggagggg