Sequence
atgc intronic sequence ATGC exonic sequencegtatccttcatctcttgtttgtctgtgctttacattttgtttgatctatgcacttgccctccattttctatctgcagatctctctctctctctctctctctctctctctacttggtgtgtgtgacttggccttgacgagttatgtccagAGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G09360.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G23430.2 (Arabidopsis thaliana), 3'ss of exon 2
gtatccttcatctcttgtttgtctgtgctttacattttgtttgatctatgcacttgccctccattttctatctgcagatctctctctctctctctctctctctctctctacttggtgtgtgtgacttggccttgac-----gagttatgtccagAGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCT
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-----------------------------------------------------ttaaatttaagactat-tatgaatgaagtcaagtttgagttttgactagagtctctatctggtacctattgcttagccttgactttctgtgtggtttaaagAGGAATTTGTGGCACATTCTGCTGCTGTCAATTGTCTTAAGATCGGAAGGAAGTCTTCTAGGGTTCTGGTAACAGGTGGTGAAGATCACAAGGTCAATCT
upper sequence: GLYMA05G09360.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G08390.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatccttcatctcttgtttgtctgtgctttacattttgtttgatctatgcacttgccctccattttctatctgcagatctctctctctctctctctctctctctctctacttggtgtgtgtgacttggccttgacgagttatgtccagAGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCT
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--------------------------------tgtgcttctaaatttataaacttttagtcaatttcttctttgactagagtctcatcccagagtattgcttagccttgactta-----tgtgat---------acattttata---agAGGAATTTGTGGCACATTCTGCTGCTGTTAATTGTCTTAAGATTGGGAGGAAGTCCTCCAGGGTTCTCGTTACAGGCGGAGAAGATCACAAGGTTAATCT
upper sequence: GLYMA05G09360.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 3'ss of exon 1
gtatccttcatctcttgtttgtctgtgctttacattttgtttgatctatgcacttgccctccattttctatctgcagatctctctctctctctctctctctctctctctacttggtgtgtgtgacttggccttgacgagttatgtccagAGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCT
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----------------------------------------------tctgcagatcccttctctacccttgcttcacagcatttgttattttgaattttgaatttttacttctcgagaaaattccttgacc---acggtttttgaacagAGGAATTTGTAGCACACTCTTCCAGTGTAAACTGTCTCAAGATTGGGAGGAAGTCATCCAGGGTTCTTGTCACCGGTGGAGAAGATCACAAGGTGAATCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213615116|gb|DB962828.1|DB962828EST: GCTAGGGTTTTGATTCATACTGATGACTACCAAACGCGCTTACAAGCTTC AGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGA
genomic: GCTAGGGTTTTGATTCATACTGATGACTACCAAACGCGCTTACAAGCTTCgtatccttca ... ttatgtccagAGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctctctctctctctacttggtgtgtgtgacttggccttgacgagttatgtccagAGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCT
ggccttgac putative branch site
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatccttcatctcttgtttgtctgtgctttacattttgtttgatctatgcacttgccctccattttctatctgcagatctctctctctctctctctctctctctctctacttggtgtgtgtgacttggccttgacgagttatgtccagAGGAATTTGTAGCACATGCTTCTACCGTCAATTGCCTCAAGATTGGACGGAAATCATCCAGGGTTCTTGTCACTGGAGGTGAAGATCACAAGGTCAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA