Sequence
atgc intronic sequence ATGC exonic sequence...caacatggcaatggattttatcgtaattattttgtacatttctgtatcataatcctcatgaagattataatgagataaaggagtttttttttttgtctagGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGATAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
Basic information
species | Glycine max |
transcript | GLYMA05G04900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G04900.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv09s0002g01380.t01 (Vitis vinifera), 3'ss of exon 2
caacatggcaatggattttatcgtaattattttgtacat-ttctgtatcataatcctcatgaagattataatgagataaag----gagtttttttttttgtctagGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGATAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
| || | | || || | | || | || | | || ||| | |||| || |||| ||| | | ||||||||||||||| ||||| || | ||||| |||||||||||||| || ||||| || ||||||||||||||| |||| ||| | || ||| | | |
------gttgtcaacttaaagcagttttgattcatgtaccttttttagttcaggttttccacagtttaaatcagtctaaatctttgatgttttctttctctttagGTGGTCTTTGATTGCTGGAAGATTGCCAGGTCGAACAGATAATGAGATAAAGAACTACTGGAATTCTCATTTGAGCAAGAAAATAAAGCAGGAGAAGCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcataatcctcatgaagattataatgagataaaggagtttttttttttgtctagGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGATAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
tttttttttttgtct CT-rich tract
attataatgagataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caacatggcaatggattttatcgtaattattttgtacatttctgtatcataatcctcatgaagattataatgagataaaggagtttttttttttgtctagGTGGTCTTTGATAGCTGGGAGGCTTCCAGGACGAACAGATAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAAAGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- -catggca
- - - - - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - -cctcatg