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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtgtgacatgtccgttactggaataaccattcatattaattttcttctctaattgcttttattgtggtttcgatcttatccatcttttctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCACGCCCACCACGTTCCTTTAGTTCTGGTTTAA

Basic information

species Glycine max
transcript GLYMA05G02800.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G02800.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 2
tatgtgtgacatgtccgttactggaataaccattcat--attaattttcttctctaa-ttgcttttattgtggtttcgatcttatccatcttttctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCACGCCCACCACGTTCCTTTAGTTCTGGTTTAA-
  |     |  | ||  |   |  | ||  ||| |||  ||| ||   ||     || ||  |  | || ||  || | || |        | |||   ||||||| || |||||||  | |||||||| || ||||||||||||  |||| ||||||| |||||||| || |||       |  |||    ||    | ||  
--ttcaaaatctctctatgcttccattatgcatacatgcatttatgagctcaaaaaagttaatgattttatgaatt-gttcatgatttctgtatcttgaacagGAATTAGATGGAAGGCTCTTGACTGTAAACAAGGCTGCTCCACGAGGATCACAGCCAGAACGCCCCCCTCGCGTGTT-TGAACCTGCTTTTAGAATGTATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307957|gb|FG998960.1|FG998960
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|192297875|gb|FG988345.1|FG988345
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|192316783|gb|FK006486.1|FK006486
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|26048991|gb|CA785444.1|CA785444
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|6134513|gb|AW132906.1|AW132906
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|9901229|gb|BE610197.1|BE610197
EST:     TGAGTACACTTGAAGAGCTTAAGAATGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|11274443|gb|BF324796.1|BF324796
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|7926371|gb|AW832397.1|AW832397
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTATATGGAAGAGTGTTGACTGTTAATAACGCTGCTCCAAGACGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|10235279|gb|BE804116.1|BE804116
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGA
EST: gi|5820123|gb|AI988329.1|AI988329
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|151396834|gb|EV266707.1|EV266707
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|192326482|gb|FK017259.1|FK017259
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|16105252|gb|BI892992.1|BI892992
EST:     TGAGTACACTTGAAAAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAATGTCGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|192316782|gb|FK006485.1|FK006485
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|192295342|gb|FG985996.1|FG985996
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|20813412|gb|BQ297890.1|BQ297890
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTANATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|192294108|gb|FG986197.1|FG986197
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|6482006|gb|AW201277.1|AW201277
EST:     GAGTACACTCTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: GAGTACACT-TGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|13481705|gb|BG511048.1|BG511048
EST:     TGAGTACACTTGAAGAGCTTAAAAAGGCTGTCGAGATGTTCAGTGGGTAC                         CAACTAAATGGAAGAGTGTTGACTGGTTA-TAATGCTGGCTCCAAA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTG-TTAATAAGGCTG-CTCCAAA
EST: gi|23056838|gb|BU577802.1|BU577802
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|6454738|gb|AW185421.1|AW185421
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|8669648|gb|BE190755.1|BE190755
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGGTAC                         CAACTAAATGGAAGAGTGTTGACTGTGAATAAGG
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGG
EST: gi|20075504|gb|BQ094287.1|BQ094287
EST:     TGAGTACACTTGAATATCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|18735126|gb|BM528579.1|BM528579
EST:     NGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|23064530|gb|BU579303.1|BU579303
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|213599012|gb|DB971984.1|DB971984
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAA
EST: gi|18722166|gb|BM523388.1|BM523388
EST:     GTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: GTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|6454674|gb|AW185357.1|AW185357
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|31459082|gb|CD401110.1|CD401110
EST:     GAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: GAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|8669118|gb|BE190225.1|BE190225
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|151399377|gb|EV269248.1|EV269248
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTATATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAG-AGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|23056167|gb|BU577707.1|BU577707
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATA
EST: gi|5677567|gb|AI938697.1|AI938697
EST:     GAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATNGT-CAGTGGTTAC                         GAACTANATGGAAGAGTGTTGACTGTTAATAA
genomic: GAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGAT-GTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAA
EST: gi|7691355|gb|AW759413.1|AW759413
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAAT
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAAT
EST: gi|20448329|gb|BQ252453.1|BQ252453
EST:     CTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: CTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|17519638|gb|BM188680.1|BM188680
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|192322729|gb|FK014420.1|FK014420
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|213617684|gb|DB959352.1|DB959352
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|151395507|gb|EV265384.1|EV265384
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|31471739|gb|CD413767.1|CD413767
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|58016546|gb|CX703288.1|CX703288
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|15815453|gb|BI787728.1|BI787728
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
EST: gi|193539009|gb|FK496411.1|FK496411
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAG
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAG
EST: gi|31306536|gb|CD391739.1|CD391739
EST:     TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTAC                         GAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA
genomic: TGAGTACACTTGAAGAGCTTAAGAAGGCTGTCGAGATGTTCAGTGGTTACgtaagttgtt ... tctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttctctaattgcttttattgtggtttcgatcttatccatcttttctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCACGCCCACCACGTTCCTTTAGTTCTGGTTTAA
    ctctaat  putative branch site (score: 3)
                               tcttatccatcttttc  putative PPT
       taattgcttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatgtgtgacatgtccgttactggaataaccattcatattaattttcttctctaattgcttttattgtggtttcgatcttatccatcttttctgtgacagGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCACGCCCACCACGTTCCTTTAGTTCTGGTTTAA

- tgtgtga
- - - - -catgtcc
- - - - - - - - gttactg
- - - - - - - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggtt