1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cataatatttacatcttacccacttgtacatgtatgcatgatttacgcatagcaaaatcttcctagtcatttttctcaaatattccttacttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTCAATGTGGAGTTTCATGGTCCAAAAGAAA
species | Glycine max |
transcript | GLYMA05G01980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACT GATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTEST: gi|298191054|gb|HO038533.1|HO038533
genomic: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTgtaagtagat ... ttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
EST: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACT GATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTEST: gi|298184467|gb|HO029680.1|HO029680
genomic: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTgtaagtagat ... ttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
EST: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACT GATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTEST: gi|12687894|gb|BG154290.1|BG154290
genomic: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTgtaagtagat ... ttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
EST: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACT GATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTEST: gi|151411773|gb|EV281584.1|EV281584
genomic: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTgtaagtagat ... ttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
EST: ATCAACATGTCGTCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACT GATGATGAGTGATTATACAATGGAGACGATAAATGATGGACTCAATGAGTTEST: gi|298185117|gb|HO030330.1|HO030330
genomic: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTgtaagtagat ... ttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
EST: ATCAACATGCCATCCCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACT GATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTEST: gi|18721187|gb|BM523328.1|BM523328
genomic: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTgtaagtagat ... ttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
EST: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACT GATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
genomic: ATCAACATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAACTgtaagtagat ... ttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTT
cgcatagcaaaatcttcctagtcatttttctcaaatattccttacttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTCAATGTGGAGTTTCATGGTCCAAAAGAAA
tccttac putative branch site (score: 2)
tattccttactttttt CT-rich tract
atttttctcaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataatatttacatcttacccacttgtacatgtatgcatgatttacgcatagcaaaatcttcctagtcatttttctcaaatattccttacttttttccagGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAATGAGTTCAATGTGGAGTTTCATGGTCCAAAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - tacccac
- - - - - - - - - - - - - - catgtat
- - - - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - caaaatc