Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattattattctcttccttatcttgcttttcaacttggatttgttttgatgattatgattgttgtttttgtggcagAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACTCATATCTCGGGGATAATGAGGTTGGACTCTTTTGCTAATGAATTGG

Basic information

species Glycine max
transcript GLYMA05G00930.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G00930.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g06400.t01 (Vitis vinifera), 3'ss of exon 2
------------gtatattattattctcttccttatcttgcttttcaacttggatttgttttgatga-----ttatgattgttgtttttgtggcagAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACTCATATCTCGGGGATAATGAGGTTGGACTCTTTTGCTAATGAATTGG
              |      | | | ||   ||    || ||||     ||  | |  | | |||       | | ||| |  ||||| | |||||| || ||||||||||||||||| || || |||||||| | |||||||||||| ||||| || ||||||  ||| ||   ||||| ||  ||||||||| 
gtattcctttttccactcagatttcccctgtttttctctgttttttgctatgcctgttgtctaatggactttcttttattttattttttattgcagAATGAATGGGTGATTTGCAGGGTATTCCAAAAGAGTTCCGGTGGGAAGAAAACCCATATTTCAGGGATAGGGAGATTAAGCTCTTATGGAAATGAATTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163920822|gb|EH040025.1|EH040025
EST:     ACCGACTCGAGGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAG                         AACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA
genomic: ACCGACTCGAGGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAGgtatattatt ... tttgtggcagAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA
EST: gi|193628239|gb|FK576769.1|FK576769
EST:     ACCGACTCGAGGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAG                         AACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA
genomic: ACCGACTCGAGGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAGgtatattatt ... tttgtggcagAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA
EST: gi|38193410|gb|CF922616.1|CF922616
EST:     ACCGACTCGAGGGGAAATTCTCTGTTCACAACCTCCCAAAAACTGCAAAG                         AACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA
genomic: ACCGACTCGAGGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAGgtatattatt ... tttgtggcagAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA
EST: gi|193383815|gb|FK349204.1|FK349204
EST:     GGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAG                         AACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA
genomic: GGGAAAATTCTCTGCTCACAACCTCCCAAAAACTGCAAAGgtatattatt ... tttgtggcagAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcttttcaacttggatttgttttgatgattatgattgttgtttttgtggcagAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTCAGCTGGGAAGAAAACTCATATCTCGGGGATAATGAGGTTGGACTCTTTTGCTAATGAATTGG
                      ttttgat  putative branch site (score: 4)
                                        ttgttttt  putative PPT
                 atttgtttt  TA-rich tract