1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttacaatttcgctgcccatgtcgcttcgtattcccgcttttgaagctcatttgtgttgtttgatttatttttttcgatgcagATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGCCCAAAGTA
species | Glycine max |
transcript | GLYMA05G00370.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCGCGTCCTTGATTACACTGTCAACGATATCCCCAATAAATCGGACAA ATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGAEST: gi|209698296|gb|BW667574.1|BW667574
genomic: ATTCGCGTCCTTGATTACACTGTCAACGATATCCCCAATAAATCGGACAAgtaagttaca ... ttcgatgcagATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGA
EST: ATTCGCGTCCTTGATTACACTGTCAACGATATCCCCAATAAATCGGACAA ATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGA
genomic: ATTCGCGTCCTTGATTACACTGTCAACGATATCCCCAATAAATCGGACAAgtaagttaca ... ttcgatgcagATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGA
gtattcccgcttttgaagctcatttgtgttgtttgatttatttttttcgatgcagATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGCCCAAAGTA
gtttgat putative branch site (score: 5)
tttatttttttc CT-rich tract
tgttgtttgatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacaatttcgctgcccatgtcgcttcgtattcccgcttttgaagctcatttgtgttgtttgatttatttttttcgatgcagATACCTTCTTGCCATTAAATGTGAAGCTGTATCTCCCGCGCTTGAAATGGAGATAAAGAGTGAGGAATCTGGATCTGGGATTCTTTTGAAGCCCAAAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC