1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgttgcacttgccttgttaatgttgaataaaacttctgcaaatctttattttaattctcttgtgaagaatagtttggtggttctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
species | Glycine max |
transcript | GLYMA04G43390.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGA GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAEST: gi|18041373|gb|BM309667.1|BM309667
genomic: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAgtatgttgca ... tctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
EST: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGA GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAEST: gi|254326214|gb|GR840806.1|GR840806
genomic: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAgtatgttgca ... tctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
EST: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGA GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAEST: gi|27426815|gb|CA938335.1|CA938335
genomic: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAgtatgttgca ... tctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
EST: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGA GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAEST: gi|298187350|gb|HO034499.1|HO034499
genomic: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAgtatgttgca ... tctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
EST: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGA GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAAEST: gi|120533661|gb|EH261794.1|EH261794
genomic: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAgtatgttgca ... tctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
EST: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGA GTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
genomic: CGCTATGTTGACAATTTCAGTTCAGGTCACAGAGGGGCCACATCCACCGAgtatgttgca ... tctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
tgcaaatctttattttaattctcttgtgaagaatagtttggtggttctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
ttttaat putative branch site (score: 3)
ttctgtc putative PPT
atctttattttaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgcacttgccttgttaatgttgaataaaacttctgcaaatctttattttaattctcttgtgaagaatagtttggtggttctgtcgtagGTATTTTCTGAAGGCTGGATATGCTGTTATCTTTCTGTACCGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT