1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgaatttgtatcacttaattatgtgtttgagaatcatatttgatcattcgatgaattttgtatcatgtttggtctatatgaattttgattatttgtccatttgatcatattattgtttcgccatagccttttcacttcagctacacatgccactagatggtaaatttattcctccaaaaattatgggtgtagGTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCAGAGTTGCAGGAAGAATTGGCACAAGCACACC
species | Glycine max |
transcript | GLYMA04G42840.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAG GTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCEST: gi|120491140|gb|EH219307.1|EH219307
genomic: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAGgtttgaattt ... atgggtgtagGTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACC
EST: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAG GTGGTGGAGGGTCTTAAEST: gi|19347929|gb|BM892508.1|BM892508
genomic: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAGgtttgaattt ... atgggtgtagGTGGTGGAGGTTCTTAA
EST: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAG GTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCEST: gi|192303643|gb|FG994537.1|FG994537
genomic: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAGgtttgaattt ... atgggtgtagGTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACC
EST: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCACGCTTCTTCATGAAAAG GTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCEST: gi|192296704|gb|FG991272.1|FG991272
genomic: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAGgtttgaattt ... atgggtgtagGTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACC
EST: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAG GTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACC
genomic: ATTGGCGAGCTAGGCAAGACTTGCTTACCATCATGCTTCTTCATGAAAAGgtttgaattt ... atgggtgtagGTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACC
cagctacacatgccactagatggtaaatttattcctccaaaaattatgggtgtagGTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCAGAGTTGCAGGAAGAATTGGCACAAGCACACC
atggtaaatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaatttgtatcacttaattatgtgtttgagaatcatatttgatcattcgatgaattttgtatcatgtttggtctatatgaattttgattatttgtccatttgatcatattattgtttcgccatagccttttcacttcagctacacatgccactagatggtaaatttattcctccaaaaattatgggtgtagGTGGTGGAGGTTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCAGAGTTGCAGGAAGAATTGGCACAAGCACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA