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...agatgaacctcttacattataacttttgtttgtttcattgatgagattttttttcttctatttatttcaatagtttacattacataaatttcaatgtcagATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGTGGCCACAGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAATTGAGC
species | Glycine max |
transcript | GLYMA04G42720.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGATATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTC ATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGEST: gi|298167788|gb|HO013051.1|HO013051
genomic: GAGAAGATATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCgtaatgttcg ... tcaatgtcagATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAG
EST: GAGAAGATATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTC ATTCGTTTGGGATGACATGATGCTGGTACTTATAATAAGAATATTGAGGAGEST: gi|12689032|gb|BG155377.1|BG155377
genomic: GAGAAGATATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCgtaatgttcg ... tcaatgtcagATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAG
EST: GAGAAGATATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTC ATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGEST: gi|20812482|gb|BQ296960.1|BQ296960
genomic: GAGAAGATATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCgtaatgttcg ... tcaatgtcagATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAG
EST: GAGAATATATCAATTAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTC ATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAG
genomic: GAGAAGATATCAAGGAGCTTCTCAACTCCAAGTTCTGCCATCCTATTCTCgtaatgttcg ... tcaatgtcagATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAG
attttttttcttctatttatttcaatagtttacattacataaatttcaatgtcagATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGTGGCCACAGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAATTGAGC
tatttatttcaatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgaacctcttacattataacttttgtttgtttcattgatgagattttttttcttctatttatttcaatagtttacattacataaatttcaatgtcagATTCGTTTGGGATGGCATGATGCTGGTACTTATAATAAGAATATTGAGGAGTGGCCACAGAGAGGTGGAGCTAATGGTAGCTTAAGATTTGAAATTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT