1 5' 3' | 2 5' 3' | 3 5' 3' |
...atcccggcttatctttgtaaggcaggcgttattaattaatatggataattgtcgtctgtaatgttaacatttacactaatcatcaatgtgccttctgtagGTAACAGCTCCTGGAGGGAGAACAAGAGATAGAAGGAGTGATTTGCTCCTTCAAAAGATAATACATGCG
species | Glycine max |
transcript | GLYMA04G42430.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
taattgtcgtctgtaatgttaacatttacactaatcatcaatgtgccttctgtagGTAACAGCTCCTGGAGGGAGAACAAGAGATAGAAGGAGTGATTTGCTCCTTCAAAAGATAATACATGCG
cactaat putative branch site (score: 2)
tgccttct putative PPT
taatgttaacattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcccggcttatctttgtaaggcaggcgttattaattaatatggataattgtcgtctgtaatgttaacatttacactaatcatcaatgtgccttctgtagGTAACAGCTCCTGGAGGGAGAACAAGAGATAGAAGGAGTGATTTGCTCCTTCAAAAGATAATACATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- cccggct
- - - - - - - - - - -gcaggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtg