1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgcatacatgttaataaaatcagcatcttttattttgctctatggatgtgcggaatagtgcaagtttgagtgaaaattgtgacgaattcgggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG
species | Glycine max |
transcript | GLYMA04G42040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT GATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGEST: gi|193337832|gb|FK302129.1|FK302129
genomic: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTgtatgcatta ... gggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGG
EST: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT GATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGEST: gi|298193962|gb|HO040610.1|HO040610
genomic: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTgtatgcatta ... gggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGG
EST: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT GATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGEST: gi|192305144|gb|FG994694.1|FG994694
genomic: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTgtatgcatta ... gggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGG
EST: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT GATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGEST: gi|193616174|gb|FK571936.1|FK571936
genomic: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTgtatgcatta ... gggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGG
EST: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGT GATCACATTCAAGAGGATTATTAAGAACAGAT
genomic: GGAATGCTTCCGCTCTGTTCCTATTCTTGGCTCCAGTgtatgcatta ... gggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGAT
gatgtgcggaatagtgcaagtttgagtgaaaattgtgacgaattcgggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG
tgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatacatgttaataaaatcagcatcttttattttgctctatggatgtgcggaatagtgcaagtttgagtgaaaattgtgacgaattcgggtttgtagGATCACATTCAAGAGGATTATTAAGAACAGATCCACAGAGAAGTTCTCGGGCATTCCATATGTCATGACACTGCTCAATTGTCTCCTTTCAGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- gcataca
- - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtga