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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctgtatgtctatttcatagtgttattgccctagctttggatatgttgtttatcagatagttaatcatgaactgagtcttattctttatatgatgttcagATTTCGGGATTGGAATTCAGACAAGGGCTCCGAGAGCAACTCTCCTGCAATTCACGTAACACGCTCGGGGAGTATTAGGAATACACTAAATTCAGTTTCT

Basic information

species Glycine max
transcript GLYMA04G41610.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058140|gb|CA801054.1|CA801054
EST:     CTTTTTAACTAGGCTACAGTCATGAATTTTCAGCAAGACAAATTTGTTAG                         ATTTCGGGATTGGAATTCAGACAAGGGCTCCGAGAGCAACTCTCCTGCAAT
genomic: CTTTTGAACTAGGCTACAGTCATGAATTTTCAGCAAGACAAATTTGTTAGgttagtctct ... tgatgttcagATTTCGGGATTGGAATTCAGACAAGGGCTCCGAGAGCAACTCTCCTGCAAT
EST: gi|213587229|gb|DB959566.1|DB959566
EST:     CTTTTGAACTAGGCTACAGTCATGAATTTTCAGCAAGACAAATTTGTTAG                         ATTTCGGGATTGGAATTCAGACAAGGGCTCCGAGAGCAACTCTCCTGCAAT
genomic: CTTTTGAACTAGGCTACAGTCATGAATTTTCAGCAAGACAAATTTGTTAGgttagtctct ... tgatgttcagATTTCGGGATTGGAATTCAGACAAGGGCTCCGAGAGCAACTCTCCTGCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttatcagatagttaatcatgaactgagtcttattctttatatgatgttcagATTTCGGGATTGGAATTCAGACAAGGGCTCCGAGAGCAACTCTCCTGCAATTCACGTAACACGCTCGGGGAGTATTAGGAATACACTAAATTCAGTTTCT
             agttaat  putative branch site (score: 4)
                                 ttattctttatatgat  TA-rich tract