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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgggttgcacatcttatttagtctggttttatcacaagatgcatctggtgtgtcaaatagacccatatgtttaaggatgaaaatttgtatatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGAATTCCCAATCGTGCTATTGATGATTCACATGTTGCAAATATTGGGGGAA

Basic information

species Glycine max
transcript GLYMA04G41150.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295845|gb|FG990883.1|FG990883
EST:     GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCG                         CAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTACTGGGAGA
genomic: GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGgtattagcta ... tatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
EST: gi|213599907|gb|DB973923.1|DB973923
EST:     GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCG                         CAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
genomic: GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGgtattagcta ... tatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
EST: gi|15814759|gb|BI787034.1|BI787034
EST:     GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCG                         CAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
genomic: GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGgtattagcta ... tatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
EST: gi|209716114|gb|BW668653.1|BW668653
EST:     GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCG                         CAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
genomic: GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGgtattagcta ... tatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
EST: gi|192324302|gb|FK018278.1|FK018278
EST:     GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCG                         CAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
genomic: GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGgtattagcta ... tatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
EST: gi|209697736|gb|BW655639.1|BW655639
EST:     GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCG                         CAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA
genomic: GAGATACTGAATCCCTTGATGCATCTTATGAGCGTTACCTCCGTAGTGCGgtattagcta ... tatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggtgtgtcaaatagacccatatgtttaaggatgaaaatttgtatatttttcagCAAGTTTCATCATATGGTTCGGGACAGTCTACTAGAACCATTAGTGGGAGAATTCCCAATCGTGCTATTGATGATTCACATGTTGCAAATATTGGGGGAA
                                             tatttttc  CT-rich tract
                         tttaaggatgaaaatt  TA-rich tract