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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactacgtaacttttgaatttcagttctagctcgagttctagttttgttatgatgttaatttctgtcactgaacaaagttatgtgcttcaatgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG

Basic information

species Glycine max
transcript GLYMA04G41010.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41010.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G074169_T01 (Zea mays), 3'ss of exon 1
aactacgtaacttttgaatttcagttctagctcgagttctagttttgttatgatgttaatttctgtcactgaaca-aagttatgtgcttcaatg---atattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG
   |   ||  || | ||| |       |    |   |  |   |||  ||  |  |    | |||     || |   ||||| |  ||| ||    || | |||||||||||||||| ||||| ||||| || ||||| || || |||||||||||| || ||| ||| |
---tgtttattttattaatatactcataaaaatggaataaatcattgaaatttt-ctgtcatttgttttccaatatgtgttatctctttctattaacatttcagGTGTATGATGTCACTCCTTTTATGGATGAGCATCCTGGTGGAGATGAGGTTTTGCTAGCTGTAACTG

upper sequence: GLYMA04G41010.2 (Glycine max), 3'ss of exon 2
lower sequence: AT5G53560.1 (Arabidopsis thaliana), 3'ss of exon 2
--aactacgtaacttttgaatttcagttctagctcgagttctagttttgttatgatgttaatttctgtcactgaacaaagttatgtgctt-caatgatatt-agGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG
    |  ||||  ||| |    |   |||||  |  | |   | |   |  |    |||  | |||   |||     | | | |||| ||     | | || ||||||||||||| || || |||||||| |||||||| ||||| ||||| || ||||| ||  ||||||
agcccctcgtagatttag----ttgattctatgttaattcacactagagaaacagagtttgtgtctactacttggttatgatctgtgattgttgcgttctttagGTGTATGATGTGACTCCATTCATGGATGATCATCCTGGAGGCGATGAAGTCTTGTTGTCCTCAACAG

upper sequence: GLYMA04G41010.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv16s0098g01230.t01 (Vitis vinifera), 3'ss of exon 2
aactacgtaacttttgaatttcagttctagctcgagttctagttttgttatgatgttaatttctgtcactgaacaaagtt-----atgtgcttcaatgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG
      | || |||||||| |          | |  |  | ||    ||||  | ||   ||   |   |  | ||| ||     || | | || ||  ||  ||||||||||||| || || |||||||| |||||||| ||||||||||| |||||| |||| ||||| |
---cctgcaa-ttttgaatgt-gacatagttttggatgttggtgactttattctattctatttaatttgttgataaaattttaaaatctccatctattgtaacagGTGTATGATGTAACTCCGTTCATGGATGATCATCCTGGAGGTGATGAAGTTTTGCTATCAGCAACTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38192925|gb|CF922131.1|CF922131
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTTATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|192328360|gb|FK020071.1|FK020071
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|8402825|gb|BE058459.1|BE058459
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|7590130|gb|AW705890.1|AW705890
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|213620027|gb|DB965361.1|DB965361
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|6747130|gb|AW317586.1|AW317586
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|38193002|gb|CF922208.1|CF922208
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTTATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|209716781|gb|BW665459.1|BW665459
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|193406887|gb|FK370974.1|FK370974
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|151410956|gb|EV280771.1|EV280771
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|254327788|gb|GR834753.1|GR834753
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|208083785|gb|GD881733.1|GD881733
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|151395715|gb|EV265592.1|EV265592
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|151405035|gb|EV274849.1|EV274849
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298166517|gb|HO009956.1|HO009956
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298190009|gb|HO032130.1|HO032130
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|8286466|gb|BE024034.1|BE024034
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298192631|gb|HO033065.1|HO033065
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298184892|gb|HO030105.1|HO030105
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298198946|gb|HO042309.1|HO042309
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298187493|gb|HO034642.1|HO034642
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|213618064|gb|DB963697.1|DB963697
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298163861|gb|HO012594.1|HO012594
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298191726|gb|HO035808.1|HO035808
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTCCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|192298149|gb|FG991669.1|FG991669
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298198862|gb|HO042225.1|HO042225
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|254340061|gb|GR858186.1|GR858186
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|254340980|gb|GR854708.1|GR854708
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|209697793|gb|BW663937.1|BW663937
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|17020763|gb|BM091797.1|BM091797
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|207816569|gb|GD787438.1|GD787438
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|151412043|gb|EV281855.1|EV281855
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|254340060|gb|GR858185.1|GR858185
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|254330905|gb|GR842170.1|GR842170
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|209697792|gb|BW663936.1|BW663936
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298180412|gb|HO021965.1|HO021965
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298170396|gb|HO019020.1|HO019020
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|298165228|gb|HO011277.1|HO011277
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGACGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT
EST: gi|151400325|gb|EV270139.1|EV270139
EST:     TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAG                         GTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGGGGTGATGAAGTT
genomic: TGGCAAAGCACGACCAGACCAAGGATTGCTGGCTCATCATTTCTGGCAAGgtctgctttt ... atgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttatgatgttaatttctgtcactgaacaaagttatgtgcttcaatgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG
        tgttaat  putative branch site (score: 3)
       atgttaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aactacgtaacttttgaatttcagttctagctcgagttctagttttgttatgatgttaatttctgtcactgaacaaagttatgtgcttcaatgatattagGTGTATGATGTCACCCCTTTCATGGAGGATCATCCCGGAGGTGATGAGGTTTTGTTATCTGCAACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT