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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggtctttcactttctttgtttcaattctcagtttacttgatgatggttttgtaaatccgatccatattccttgcatgcaaaccatcatagtggcttataaggttgcacattttgactccttctactgtggcctattcccactttcaaatgtttcagGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCC

Basic information

species Glycine max
transcript GLYMA04G40770.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397932|gb|EV267805.1|EV267805
EST:     CTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAG                         GAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGC
genomic: CTGTAATCTTGCAGCTCTTGGTGCCCAGAAATTTGATCCATCTATAACAGgtcaggtctt ... aatgtttcagGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcacattttgactccttctactgtggcctattcccactttcaaatgtttcagGAAGGCAAAAACTCAGTAGCCCGTCATGGAATATGGCACCAATTCCATTGCAAGGCACTTCCACTTATTATAACCAGCACATACCCCACTATCCATTTCC
        ttttgac  putative branch site (score: 3)
 tttcaaat  TA-rich tract