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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttctttttaaaacatgcttttctgggtcaattgttgtttttcttctactaatctcttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTATCTCTACACAAGTGATTATGGCGGTTGCTGAGAATGTTGGGGCCAAAAT

Basic information

species Glycine max
transcript GLYMA04G40760.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307293|gb|FK002371.1|FK002371
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAANNNNNNNAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
EST: gi|298184509|gb|HO029722.1|HO029722
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAANNNNNNNAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
EST: gi|209727210|gb|BW663299.1|BW663299
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAANNNNNNNAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
EST: gi|254334792|gb|GR844577.1|GR844577
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAANNNNNNNAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
EST: gi|298169172|gb|HO020532.1|HO020532
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAANNNNNNNAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
EST: gi|298190245|gb|HO032366.1|HO032366
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAA-TTTTTTAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
EST: gi|209715023|gb|BW650874.1|BW650874
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAANNNNNNNAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
EST: gi|298177477|gb|HO023610.1|HO023610
EST:     TCTTCTCGGTTTGATCTTATATCAATGGAANNNNNNNAGACAGAACTCGG                         ATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA
genomic: TCTTCTCGGTTTGATCTTATATCAATGGAATTTTTTTAGACAGAACTCGGgtatgctttc ... cttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacatgcttttctgggtcaattgttgtttttcttctactaatctcttgacacagATTCACAGGGAAATCTGATTGCATAGGAACAAAAAAGACAACACCTTTTTATCTCTACACAAGTGATTATGGCGGTTGCTGAGAATGTTGGGGCCAAAAT
                           tttttcttctactaat  CT-rich tract
                        ttgttttt  TA-rich tract