1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttgccctctgttgctgcagccatttctatgctctatttgtttggcttgttatctgttgaccttgttcataaattcgttttatttgactttgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTGGGACTGAAACCTGTTACTGGTGTTAGTAGGGTCAC
species | Glycine max |
transcript | GLYMA04G40550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGATGACGAAGATGACAAGGAAGACGATGCTCAAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGEST: gi|31462171|gb|CD404199.1|CD404199
genomic: ACGACGACGAAGATGACAAGGAAGACGATGCTCAAGgtcctcttct ... tgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: ACGAAGATGACAAGGAAGACGATGCTCAAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGEST: gi|31459753|gb|CD401781.1|CD401781
genomic: ACGAAGATGACAAGGAAGACGATGCTCAAGgtcctcttct ... tgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: AGATGACAAGGAAGACGATGCTCAAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGEST: gi|120534441|gb|EH262574.1|EH262574
genomic: AGATGACAAGGAAGACGATGCTCAAGgtcctcttct ... tgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: GACGATGCTCAAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGEST: gi|208129433|gb|GD928901.1|GD928901
genomic: GACGATGCTCAAGgtcctcttct ... tgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
EST: AAGTACGTACGACGACGACGACGAAGATGACAAGGAAGACGATGCTCAAG GTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
genomic: AAG-ACG-ACGACGACGACGACGAAGATGACAAGGAAGACGATGCTCAAGgtcctcttct ... tgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAG
cttgttatctgttgaccttgttcataaattcgttttatttgactttgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTGGGACTGAAACCTGTTACTGGTGTTAGTAGGGTCAC
ataaattcgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgccctctgttgctgcagccatttctatgctctatttgtttggcttgttatctgttgaccttgttcataaattcgttttatttgactttgagattcagGTGGTGCTGAGGGTTCAAAGCAGAGCAGAAGTGAGAAGAAGAGCCGAAAAGCAATGTTGAAGCTGGGACTGAAACCTGTTACTGGTGTTAGTAGGGTCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- tgccctc
- - - -tctgttg
- - - - - - - -tgcagcc
- - - - - - - - - - - - - -tatgctc
- - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - gcttgtt