1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acactggttctcatgcatagtttcagtttgttctgaatttctacttttgatttgactctttccacataactttgtgatattcatttctgggaacttgcagGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG
species | Glycine max |
transcript | GLYMA04G40220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAGCATTTGCAAG GTTTCTTTGTCACEST: gi|7591342|gb|AW707077.1|AW707077
genomic: ACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAGCATTTGCAAGgtatcgcttc ... gaacttgcagGTTTCTTTGTCAC
EST: ACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCACCAGCATTTGCAAG GTTTCTTTGTCACAATTTGTATATCANCTGTGATGTTCAAGTCAAATGAAAEST: gi|193710336|gb|FK645540.1|FK645540
genomic: ACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAGCATTTGCAAGgtatcgcttc ... gaacttgcagGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAA
EST: ACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCACCAGCATTTGCAAG GTTTCTTTGTCACAATTTGTATATCANCTGTGATGTTCAAGTCAAATGAAA
genomic: ACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAGCATTTGCAAGgtatcgcttc ... gaacttgcagGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAA
tttgatttgactctttccacataactttgtgatattcatttctgggaacttgcagGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG
acataac putative branch site (score: 3)
atattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acactggttctcatgcatagtttcagtttgttctgaatttctacttttgatttgactctttccacataactttgtgatattcatttctgggaacttgcagGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- actggtt
- - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - -tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctgg