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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgccaagtgcttggagccagtgtatatatgacttaccttttggcctctctctatgtgaatgcttagatttatttcgttattaccttcttttttttacagTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTT

Basic information

species Glycine max
transcript GLYMA04G40210.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40210.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G10850.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------------------------------atgccaagtgct-tggagccagtgtatatatgacttaccttttggcctctctctatgtgaatgctta-gattta----tttcgttat--taccttcttttttttacagTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTT
                                       | ||| |  |  |  |     |   || ||   ||| || |     | |||  |||   ||  ||| || |||    ||  | | |  |  |||   |||| |||||||| ||||||  |||||||| |||||  |||| || || |||||||||||||||||  | ||||| ||  | | | ||||||| || || ||||  ||||
gtaagtggtaacattaagctgaatcctcttgttcttccctaccatggaccctatatgttctccgtagatcttttatctctgtaaatgtctaaatggagatagttatgagttaaacattaagctgtgtttactttgattttatacagTTTGTTGCTGGATGTGGGAAGTTTTTTGAAGGGACAGCTGAGCAGATGTATCAGTCGTTGTGTGTGACTCTGGCTGCATTACCTAAACCGACACAGGTTT

upper sequence: GLYMA04G40210.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv13s0067g00180.t01 (Vitis vinifera), 3'ss of exon 4
-atg-ccaagtgcttggagccagtgtatatatgacttaccttttggcctctctctatgtgaatgcttagatttatttcgttattaccttcttttttttacagTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTT
 ||| |    | | |  |    ||    | ||    | | |||| | ||  ||   |  || || | |    |   | ||  |||| ||| |   | | |||||| |||||| |||||||||||||||  |||| || ||||| ||||||||||| || |||||||||||||| |  ||||| |||||||||||  |||| |
aatgactggatccctttactttgtaataaaatcttgttcttttttgacttgctagttacga-tgttaaacagttaatagtggttac-ttcatgcatgtgcagTTTGTTGCTGGTTGTGGGAAATTTTTTGAAGGCACAGCAGAACAGATGTATCAATCGCTATGTGTAACATTGGCCTCATTGCCAAAGCCAACTAGAGTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctctatgtgaatgcttagatttatttcgttattaccttcttttttttacagTTTATTGCTGATTGTGGGAAATTTTTCAAAGGAACTGCAGAGCAGATGTATCAGTCACTATGTGTAACATTAGGTTCATTACCAAAGCCAACACGAGTTT
                       tttatttcgttattac  CT-rich tract
                      atttatttcgttatta  TA-rich tract