1 5' 3' | 2 5' 3' | 3 5' 3' |
...actatatgacagaatagtagctagttttttttttttttttgtgccagtggtaaataatggatataatataaagttttcttttctggtttgaatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTC
species | Glycine max |
transcript | GLYMA04G40170.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGAT GGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGAEST: gi|6666382|gb|AW277841.1|AW277841
genomic: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATgtgagagaat ... aatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGA
EST: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGAT GGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGNGATTTGGAEST: gi|7691226|gb|AW759357.1|AW759357
genomic: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATgtgagagaat ... aatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGA
EST: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGAT GGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGAEST: gi|22926847|gb|BU543986.1|BU543986
genomic: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATgtgagagaat ... aatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGA
EST: ACCGATCAAGATCTTAAAGAT GGGGTGNNNGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGAEST: gi|6666554|gb|AW278005.1|AW278005
genomic: ACCGATCAAGATCTTAAAGATgtgagagaat ... aatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGA
EST: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGAT GGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGA
genomic: CAGCAACTATGCTCAAGTTCGGATTCCTGACCGATCAAGATCTTAAAGATgtgagagaat ... aatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGA
agtggtaaataatggatataatataaagttttcttttctggtttgaatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTC
taaataatggatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actatatgacagaatagtagctagttttttttttttttttgtgccagtggtaaataatggatataatataaagttttcttttctggtttgaatgaagcagGGGGTGCCTGATTTATCCGAGTATGGGGATGTGTATGAGCTGGGATTTGGATTGGGACATGATAAGCCTCCAACCAGTGCTTTGGTGAAGAAAGAATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - -tttgtgc