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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcccatcttttcctaattccttattagcttatattatcttaatttcgtacgagagattgggaaatatgattttgaaaatgcttttttcgatattaagatatttgtgaaagtatttgactaattttgatcatggcagGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGATACTCCGGGGCATGTTGACTTCTCGTATGAG

Basic information

species Glycine max
transcript GLYMA04G38360.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38360.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g03050.t01 (Vitis vinifera), 3'ss of exon 2
gttcccatcttttcctaattccttattagcttatattatcttaatttcgtacgagagattgggaaatatgattttgaaaatgcttttttcgatattaagatatttgtgaaagta--tttgactaattttgatcatggcagGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGATACTCCGGGGCATGTTGACTTCTCGTATGAG
                                       | ||    |  || | ||  |   | | | | |||      || |           ||  | ||  || |   |    ||   |||| ||  | || |||||||||| ||||||||||||| |||||||||||||| |||||| |||||||||| |||||||| |||||||| |||||||| ||||||
---------------------------------------cctacaagcacacta-agtcttccacagagggtttcttctctgatcggcctctggctattacatccgtaagtttgatctttcttaatgttctttattgcagGCAGCTCGAATGCGTTATGTATTTGAAAATGAACCATATTGCCTGAATCTAATTGATACTCCAGGGCATGTGGACTTCTCCTATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16284870|gb|BI946314.1|BI946314
EST:     TCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAG                         GCAGCTAGAATGCGTTATGTGTNTGAAAATGAACCTTATTGCTTGAATCTA
genomic: TCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGgttcccatct ... atcatggcagGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTA
EST: gi|16282790|gb|BI945208.1|BI945208
EST:     TCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAG                         GCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTA
genomic: TCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGgttcccatct ... atcatggcagGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTA
EST: gi|16284257|gb|BI945987.1|BI945987
EST:     TCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAG                         GCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTA
genomic: TCGATAACATGGATTTGGAGAGAGAAAGAGGCATCACTATTAAGCTCCAGgttcccatct ... atcatggcagGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTA
EST: gi|213602994|gb|DB958582.1|DB958582
EST:     CGATAACATGGATTTGGAGAGAGAAAAGAG-CATCACTATTAAGCTCCAG                         GCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTA
genomic: CGATAACATGGATTTGGAGAGAGAAA-GAGGCATCACTATTAAGCTCCAGgttcccatct ... atcatggcagGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcgatattaagatatttgtgaaagtatttgactaattttgatcatggcagGCAGCTAGAATGCGTTATGTGTTTGAAAATGAACCTTATTGCTTGAATCTAATAGATACTCCGGGGCATGTTGACTTCTCGTATGAG
        atattaagatatttgt  TA-rich tract