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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaccgctgaatttaattttgttgatattaactctttgttgactgtttgattctgcttctgatatatctttaatgttttaaatgctatttaatttttagATCGTTATCTAGAAGAAGATGGCAGCTGAGCTAGTCAACGGTGCAACAAGTGAGAAACTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAAC

Basic information

species Glycine max
transcript GLYMA04G38320.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252490|gb|BG363401.1|BG363401
EST:     TGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAG                         ATCGTTATCTAGAAGAAGATGGCAGCTGAGCTAGTCAACGGTGCAACAAGT
genomic: TGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAGgtgatttgat ... taatttttagATCGTTATCTAGAAGAAGATGGCAGCTGAGCTAGTCAACGGTGCAACAAGT
EST: gi|209717469|gb|BW653937.1|BW653937
EST:     TGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAG                         ATCGTTATCTAGAAGAAGATGGCAGCTGAGCTAGTCAACGGTGCAACAAGT
genomic: TGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAGgtgatttgat ... taatttttagATCGTTATCTAGAAGAAGATGGCAGCTGAGCTAGTCAACGGTGCAACAAGT
EST: gi|208172018|gb|GD968439.1|GD968439
EST:     TG-AACATGATGACATTTTTTACTT-GGCCTGAGGTCAATTTACTGGAAG                         ATCGTTATCTAGAAGAAGATGGCAG
genomic: TGTAACATGATGACATTTTTTACTTTGGCCTGAGGTCAATTTACTGGAAGgtgatttgat ... taatttttagATCGTTATCTAGAAGAAGATGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgattctgcttctgatatatctttaatgttttaaatgctatttaatttttagATCGTTATCTAGAAGAAGATGGCAGCTGAGCTAGTCAACGGTGCAACAAGTGAGAAACTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAAC
                                                ttttt  CT-rich tract
               tgatatatctttaatg  TA-rich tract