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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactggctgtctagtttctcaattatattctgcgttcatgtgtggaattctacgtagttttaccaatttgtgtgtgacaaattgactgacttaaatgcagGTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAG

Basic information

species Glycine max
transcript GLYMA04G37640.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37640.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g00570.t01 (Vitis vinifera), 3'ss of exon 3
aactggctgtctagtttctcaattatattctgcgttcatgtgtggaattctacgtagttttaccaatttgtgtgtgaca---aattgactgacttaaatgcagGTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAG
    |  | | ||  ||    | || | ||||   | ||   ||  |  ||   ||  |      ||   ||| | ||    |||||| |  |||    |||||| || ||||||||||| | ||| || || || |||||| |||| || ||||||||||||||||||||| |||||||||||
-ggagcttctatacattgagcagtagaatctgaaatgatacttgtgagact-tataactcagtgtatggctgttttaccctcaattgaattgcttttg-gcagGTACTTAGCAATCCAGAAAAGACGCCCATTCACACCTTTCTTTGTAACTATGATTTGAGTGACATGCCATCTGGTACCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16106314|gb|BI894054.1|BI894054
EST:     GATCTGAAAAGCCTCGTATACGTATACCTATGAAAGGACGTATTCAACTG                         GTTCTCAGCAATCCAGAGAGGACACCTATCCATACCNNNNNNNGCAATTAT
genomic: GATCTGAAAAGCCTCGTATACGTATACCTATGAAAGGACGTATTCAACTGgtaattcact ... ttaaatgcagGTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTAT
EST: gi|51341160|gb|CO982477.1|CO982477
EST:     GATCTGAAAAGCCTCGTATACGTATACCTATGAAAGGACGTATTCAACTG                         GTTCTCAGCAATCCAGAGAGGACACCTATCCATACCNNNNNNNGCAATTAT
genomic: GATCTGAAAAGCCTCGTATACGTATACCTATGAAAGGACGTATTCAACTGgtaattcact ... ttaaatgcagGTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattctacgtagttttaccaatttgtgtgtgacaaattgactgacttaaatgcagGTTCTCAGCAATCCAGAGAGGACACCTATCCATACCTTTTTTTGCAATTATGATTTGAGTGACATGCCAACTGGTACCAAG
                                      gactgac  putative branch site (score: 2)
         tagtttta  TA-rich tract