1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atgtagaaccattttgggcgttggatgctctaaaatggatcttgtggttggtttcattggctaggctggcattatttacactctgttgatgtgattacagATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGG
species | Glycine max |
transcript | GLYMA04G36360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTEST: gi|13481964|gb|BG511307.1|BG511307
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTEST: gi|209720934|gb|BW682413.1|BW682413
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
EST: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCT ATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
genomic: CAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTgtaaatacac ... gtgattacagATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGT
ggttggtttcattggctaggctggcattatttacactctgttgatgtgattacagATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGG
tgttgat putative branch site (score: 4)
attatttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtagaaccattttgggcgttggatgctctaaaatggatcttgtggttggtttcattggctaggctggcattatttacactctgttgatgtgattacagATAAGATCCATAGTAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat