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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcgcgtcgccacgccgttattcgaaacgccgttttttttttctgaactccgttatgtttttcgttgtttgttagGCTAGGAATGACCGAAGAGAACTGGAGCAGCGGGATTTCGCGACTTCGCGGCATCCCGAATTTCGTTTCAAAACGGAATTTCAGAGCCACGAGCCCGAG

Basic information

species Glycine max
transcript GLYMA04G35860.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5509067|gb|AI855625.1|AI855625
EST:     ACCGAGGTGGGCGCGTTGTGATATTCTAACGCGACGATCGGAAAAAGAAT                         GCTAGGAATGACCGAAGAGAACTGGAGCAGCGGGATTTCGCGACTTCGCGG
genomic: ACCGAGGTGGGCGCGTTGTGATATTCGAACGCGACGATCGGAAAAAGAATgtgagtatcg ... tgtttgttagGCTAGGAATGACCGAAGAGAACTGGAGCAGCGGGATTTCGCGACTTCGCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcgaaacgccgttttttttttctgaactccgttatgtttttcgttgtttgttagGCTAGGAATGACCGAAGAGAACTGGAGCAGCGGGATTTCGCGACTTCGCGGCATCCCGAATTTCGTTTCAAAACGGAATTTCAGAGCCACGAGCCCGAG
                                     tttttcgtt  CT-rich tract
            ttttttttttctgaa  TA-rich tract