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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttggtctctgctgtgttgaattgttgtgttgttaggttgtgttttgtgttgttaatgttgattgtgtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTCACTAATATGAGTCTTGGAAAGGTGGCTGTGTCTTTCACTCACACTATCA

Basic information

species Glycine max
transcript GLYMA04G35730.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G35730.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv17s0000g08560.t01 (Vitis vinifera), 3'ss of exon 2
gtaatttggtctctgctgtgttga----attgttgtgttgttaggttgtgttttgtgttgttaatgttgattgt--gtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTCACTAATATGAGTCTTGGAAAGGTGGCTGTGTCTTTCACTCACACTATCA
||| ||   | |     | | | |     || |    || ||   || |   |||   |  | ||  ||  | |   | |  ||||||| ||| ||  |||| || ||||  ||||| || || || ||||| || ||||||||||||||||| || ||| |||| || ||||||||||| || |
gtatttcaatgttgttgggggtaatcctgttttcaaattattgaatt-tacattgcacttcttattgtgtctattcattttacagCTTGTAGCAATCCTGCCACTTGCTGTGGTGCACACGTTAGGCAACCTGTTTACTAATATGAGTCTTGGGAAAGTGTCTGTTTCATTCACTCACACAATTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193518858|gb|FK474539.1|FK474539
EST:     GTTTGAATCTCTATAAGAGGCCTAAACTCAGTGGTGCTATG                         CTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC
genomic: GTTTGAATCTCTATAAGAGGCCTAAACTCAGTGGTGCTATGgtaatttggt ... tgtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC
EST: gi|7145742|gb|AW507664.1|AW507664
EST:     TTATGTGGGGTTTGAATCTCTATAAGAGGCCTAAACTCAGTGGTGCTATG                         CTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC
genomic: TTATGTGGGGTTTGAATCTCTATAAGAGGCCTAAACTCAGTGGTGCTATGgtaatttggt ... tgtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC
EST: gi|192301535|gb|FG998443.1|FG998443
EST:     TCAGTGGTGCTATG                         C-TGGAGCGA-TTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC
genomic: TCAGTGGTGCTATGgtaatttggt ... tgtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC
EST: gi|207809955|gb|GD781931.1|GD781931
EST:     GTTTGAATCTCTATAAGAGGCCTAAACTCAGTGGTGCTATG                         CTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC
genomic: GTTTGAATCTCTATAAGAGGCCTAAACTCAGTGGTGCTATGgtaatttggt ... tgtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttgtgttgttaggttgtgttttgtgttgttaatgttgattgtgtgtggcagCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTCACTAATATGAGTCTTGGAAAGGTGGCTGTGTCTTTCACTCACACTATCA
                             ttgttaat  TA-rich tract