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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatacttatctcttcacatcacaacctataatcgttctcagaagctaatattaactaatcaaccgtacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTG

Basic information

species Glycine max
transcript GLYMA04G35190.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719806|gb|AW307453.1|AW307453
EST:     GGGCAACATATTATTGAAGTCAAGCCTCAG                         GGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG
genomic: GGGCAACATATTATTGAAGTCAAGCCTCAGgtatatactt ... aaccgtacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG
EST: gi|15287895|gb|BI471786.1|BI471786
EST:     AGCCTGTTGTTGTNNNNNNNGGGCAACATATTATTGAAGTCAAGCCTCAG                         GGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG
genomic: AGCCTGTTGTTGTAAAAAAAGGGCAACATATTATTGAAGTCAAGCCTCAGgtatatactt ... aaccgtacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcacaacctataatcgttctcagaagctaatattaactaatcaaccgtacagGGCATTACTAAAGGGTCAGTTGCACAGGAAGTTCTTTCTTCCCTAACCAAGAAGGGTAAATCGCCAGATTTTGTACTGTGCATTGGTGATGATAGATCTG
                              taatattaactaatca  TA-rich tract