1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagcaaaatgcaaacttggcttttgaattgttaaaggcacttctttttagtgttttaaacaataggtcttacttggaagtgatgcttatgttgttattttgatgactgtttcggcagAGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG
species | Glycine max |
transcript | GLYMA04G34820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCAGTATCTGGGGTTGGATGGAGAAAAAAGTTC-ATTGGTCTTGAT AGTGTGAAGGTTAATTTGATAATGACAGATTATTCCATGCCCGGGATGACAEST: gi|23064178|gb|BU578951.1|BU578951
genomic: CTCTGCAGTATCTGGGGTTGGATGGAGAAAAAAGTTCCATTGGTCTTGATgtgagcaaaa ... gtttcggcagAGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACA
EST: CTCTGCAGTATCTGGGGTTGGATGGAGAAAAAAGTTCCATTGGTCTTGAT AGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACAEST: gi|17400409|gb|BM177191.1|BM177191
genomic: CTCTGCAGTATCTGGGGTTGGATGGAGAAAAAAGTTCCATTGGTCTTGATgtgagcaaaa ... gtttcggcagAGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACA
EST: CTCTGCAGTATCTGGGGTTGGATGGAGAAAAAAGTTCCATTGGTCTTGAT AGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACA
genomic: CTCTGCAGTATCTGGGGTTGGATGGAGAAAAAAGTTCCATTGGTCTTGATgtgagcaaaa ... gtttcggcagAGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACA
taggtcttacttggaagtgatgcttatgttgttattttgatgactgtttcggcagAGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG
ctgtttc CT-rich tract
ttatgttgttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaaaatgcaaacttggcttttgaattgttaaaggcacttctttttagtgttttaaacaataggtcttacttggaagtgatgcttatgttgttattttgatgactgtttcggcagAGTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCCGGGATGACAGGATATGAATTGCTCAAGAAGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG