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...gggtttgattatgtgtgggatgatattgttagatggtgtaagtgaagaaactataacatgtgtattgagactgataacttgtccttttttcaaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGAGGAGGAC
species | Glycine max |
transcript | GLYMA04G32540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGAACTTAGCATGCGGCCEST: gi|208116058|gb|GD919493.1|GD919493
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGA-CTT-GCATGCGGCC
EST: TGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCAGCCCCEST: gi|207825564|gb|GD800607.1|GD800607
genomic: TGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCEST: gi|208139406|gb|GD933902.1|GD933902
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACEST: gi|207702034|gb|GD683908.1|GD683908
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGAC
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCEST: gi|193642568|gb|FK594078.1|FK594078
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCEST: gi|193464137|gb|FK427921.1|FK427921
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCEST: gi|208265109|gb|GE061741.1|GE061741
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCEST: gi|193565706|gb|FK524531.1|FK524531
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG TGGGTCACCCAGGGAT
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGAT
agaaactataacatgtgtattgagactgataacttgtccttttttcaaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGAGGAGGAC
tgataac putative branch site (score: 2)
cttgtccttttttc CT-rich tract
ttttttcaaaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtttgattatgtgtgggatgatattgttagatggtgtaagtgaagaaactataacatgtgtattgagactgataacttgtccttttttcaaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCCTGAAATTCGTGATGTATTTGGTGATTTTGATGATGATGAAGAGGAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
gggtttg
- - - - - - gtgtggg
- - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - -gaagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtg