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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcacttatatagacagaacagtttagttggtttaaattttagaagtcgtttgcaggtttggcatatagatggtagctgattgaacttttttctctttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAACCCCTCAAACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTTCAATATGTTCCGAGAT

Basic information

species Glycine max
transcript GLYMA04G24950.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G24950.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0065g00900.t01 (Vitis vinifera), 3'ss of exon 1
tcacttatatagacagaacagtttagttggtttaaattttagaagtcgtttgcaggtttggcat---atagatggtagctgattgaacttttttctctttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAACCCCTCAAACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTTCAATATGTTCCGAGAT
 || || | | |    |  | |||     |    ||   |  ||     |   || | | |  |   ||||     |  | | ||||  | ||| |    ||||| ||||| ||||| ||||||||||| || |||| ||| ||||||||||| || || ||||| |||||  |||||||| |||| ||||||||||| ||||
-cagttgttttggagtaggattttgccatgcaataaagatgaaacataataatagttattgtttttgataggcaaaaattaactgaaaatgtttttg--acagATTGTCATCTGGTTCATTATACCAGCTACGAGAAGCCCACAAACTGATCATAACAACAATGCCCTTGCGCTGATTGTTCTGCTCCAATATGTTCCCAGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345585|gb|GR851747.1|GR851747
EST:     TAAGATCTGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAG                         ATGGTCATTTGGTTTATTATACCAGCAACAAGAACCCCTCAAACTGATCAC
genomic: TAAGATCTGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAGgtgtgttgtt ... tctctttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAACCCCTCAAACTGATCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtttgcaggtttggcatatagatggtagctgattgaacttttttctctttcagATGGTCATTTGGTTTATTATACCAGCAACAAGAACCCCTCAAACTGATCACAAGAATAATGCGCTTGCATTGATTGTTTTGCTTCAATATGTTCCGAGAT
                            agctgat  putative branch site (score: 4)
                                       cttttttctctttc  putative PPT
                                     aactttttt  TA-rich tract