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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttccataatttgatgcactaaatatacatttggaccaagtttgtttcattaaaattttggaaaatcatcgatttattataaaattttatttcttcaaagaactaaatacattcataaatgaataagttgcttacatatcaagtgtttactattgtacacagGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTT

Basic information

species Glycine max
transcript GLYMA04G15590.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G15590.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G136567_T02 (Zea mays), 3'ss of exon 1
gttagttccataatttgatgcactaaatatacatttggaccaagtttgt-ttcattaaaattttggaaaatcatcgatttattataaaattttatttcttcaaagaactaaatacattcataaatgaataagttgcttacatatcaagtgtttactattgtacacagGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTT
                                           ||  ||   ||        ||||        ||| |||||      ||   ||||||    |    || |    ||  |     ||    |||     |   ||  ||||  |   |  |||||||| ||||| || || ||||||||||| || ||| | || || ||||| || |||||||| || || ||||||||| |||| || |||||||| || || 
-------------------------------------------gtgcgtgcacagggggggcttggttctgttccgagttattgcgctgtta-gtttcttgcttggcaaaactctgctctgactctgattgcatgcggctctgcgaatcgtttcgt---gcgcacagGCCGGTGATCGACCAGAACTTCTACTACGCGGGGCTCAAGTTCACCTCGCCGACCTTCTCCTGCGCCATGAGCAACATGCTCCCCGCCATGACCTTCGTC

upper sequence: GLYMA04G15590.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G07050.1 (Arabidopsis thaliana), 3'ss of exon 2
gttagttccataatttgatgcactaaatatacatttggaccaagtttgtttcattaaaattttggaaaatcatcgatt-tattataaaattttatttcttcaaagaactaaatacattcataaatgaataagttgcttacatatcaagtgtttactattgtacacagGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTT
                                                           | ||    |||||  |  | ||||  |  |  || | | | ||||      |  | |||   ||  || | |     ||     |    | |  || | | ||||  |||| ||||| |||||||||||||||||    ||| ||||||  || |||||||| |||||||| || ||||| ||| ||||||| |||||||| ||| | 
---------------------------------------------------------gttgttacttaatcactgtctctatttgactaccttgtctttgcaaa------agcaaattagaaagagagttaacatttttttctttc--tataaacaaatttaca--gGCCAGTGATCGATCAAAACTTCTACTACATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCCATGACCTTTATC

upper sequence: GLYMA04G15590.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 3'ss of exon 2
gttagttccataatttgatgcactaaatatacatttggaccaagtttgtttcattaaaattttggaaaatcatcgatttattataaaattttatttcttcaaaga-actaaatacattcataaatgaataagttgcttacatatcaagtgtttactattgtacacagGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTT
                                           ||| || || ||    ||||      |  ||  |||  |  |  |||  |  | | || | | |  ||  |   || |   |  |||       |    |      ||||  |    |  | ||||||||||| || || ||||| || |||||||| |||||  | || ||||| ||||||||||| |||||||||||  ||||||| |||||||| || || 
-------------------------------------------gttagtctccttttttttttttc--cttttctttttcatgcattattgcaaatatgcagacacatcaatcaagctcttgtgtagatattcaatctgatcaaagcaagtttgtttggattgatagGCCTGTGATCGACCAGAACTTTTATTATGCTGGTTTGAAGCTGACTTCCCCGACCTTCTCATGCGCAATGAGCAATATGCTTCCGGCCATGACATTCGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattcataaatgaataagttgcttacatatcaagtgtttactattgtacacagGCCTGTGATTGATCAAAACTTCTACTATGCTGGGTTGAAATTAACCTCCCCAACCTTCTCATGTGCAATGAGCAACGTGCTTCCTGCCATGACTTTTGTT
                     tgcttac  putative branch site (score: 2)
       ataaatgaataagtt  TA-rich tract