Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG

Basic information

species Glycine max
transcript GLYMA04G14640.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 3'ss of exon 2
gtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                    | |    | || |     |   || | || |   |  ||||    | |    ||  |  ||  ||  ||| |   | |   ||  || ||        | ||| ||||     ||||||| |||||||| ||||||||||| |||||| | || ||| |||| |||||| |||||||||| ||  | ||||||||||| |||||||||||   |||
-------------------agctagcat-aaccacagcaaatatgtttgcgcccgcttttt----tcaccttatatgtgtgcattcttatgacaatcatcctttttttttc-------ttttgttgta-----cagCTCGCCAGAAGAAGGCTGTGAAGATCTTCCCCCGCCCAACATCTGGCCCTCTTCGACCCATTGTTCAGTGCCAAACTTTGAAGTACAACATGAAGTCGAG

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 2
gtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtctt--ttgtggtaaaaagatcagcttgagttagtatt--atggttacttttaattctttgacatgttattgctgtattctt----cagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                                            | || |  |  | ||  |   || |  ||||| |   |  | |  || |  ||  || ||| ||    | | |   |    ||   | ||||     |||||||||| ||||| ||||||||||| |||||| | || || ||||| |||||  | |||||||| ||  | || ||||| || |||||||||||    ||
--------------------------------------------tactataatgatattgatgaaggaaccaagatgaatgttcgcttttactcaataattgcttctacacttctaattggaccctgtaatgttctgtatgcagCTCGTCAAAAGAAGGCTGTGAAGATATTCCCCCGCCCGACTGCTGGTCCTCTACGCCCCATTGTTCAATGCCAGACTTTAAAGTACAACATGAAGTCAAG

upper sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 3'ss of exon 1
gtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                                  || |  |   || |||   |||||||| |  |   || ||  |    |  |  |  |||  | |||     |   |||   | | || |      ||| ||||| | ||||||||||||||||||||||||||  | || || | |||||| ||| | ||  |||| ||||| ||||||||||| |||||||||||||| ||
----------------------------------tcatgtttgattttgt-ccagtcttttatattttgaatatttgtaccatgtgatgctattttaactgagcttaaattggtttttcat-gaaaccatctccagCTAGACAGAAGAAAGCTGTGAAGATTTTCCCTCGCCCCACTGTTGGACCACTTCGCCCACTTGTTCATGGACAAACTTTGAAGTACAACATGAAAGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4395852|gb|AI494849.1|AI494849
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGATGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|213592187|gb|DB965978.1|DB965978
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|254337993|gb|GR845456.1|GR845456
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|26059098|gb|CA802012.1|CA802012
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15814215|gb|BI786490.1|BI786490
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19268693|gb|BM884949.1|BM884949
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|22524921|gb|BU083732.1|BU083732
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|8284791|gb|BE022350.1|BE022350
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15203036|gb|BI425804.1|BI425804
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6502182|gb|AW203555.1|AW203555
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTACCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|12774389|gb|BG239316.1|BG239316
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19268958|gb|BM885214.1|BM885214
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|38193701|gb|CF922907.1|CF922907
EST:     TTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6724689|gb|AW309022.1|AW309022
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|4314143|gb|AI461262.1|AI461262
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|21256994|gb|BQ453882.1|BQ453882
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|14008777|gb|BG725381.1|BG725381
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|9901290|gb|BE610258.1|BE610258
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|9900318|gb|BE609286.1|BE609286
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|120533320|gb|EH261453.1|EH261453
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15813220|gb|BI785495.1|BI785495
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6916448|gb|AW397978.1|AW397978
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|4293744|gb|AI437949.1|AI437949
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19453465|gb|BM954875.1|BM954875
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|193595404|gb|FK550881.1|FK550881
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15285759|gb|BI469650.1|BI469650
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|17021504|gb|BM092538.1|BM092538
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|4305959|gb|AI443836.1|AI443836
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6747093|gb|AW317549.1|AW317549
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|16995671|gb|BM085043.1|BM085043
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|209705859|gb|BW675964.1|BW675964
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15661801|gb|BI699172.1|BI699172
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|120533365|gb|EH261498.1|EH261498
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|58015231|gb|CX701973.1|CX701973
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19053098|gb|BM731765.1|BM731765
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|24136545|gb|BU927055.1|BU927055
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|20814298|gb|BQ298776.1|BQ298776
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|8827981|gb|BE211711.1|BE211711
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|21678445|gb|BQ630796.1|BQ630796
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCTTTATCTACAGCTGGACCT
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCC-AGACCTACAGCTGGACCT
EST: gi|7042619|gb|AW472513.1|AW472513
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTTGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|209709536|gb|BW681226.1|BW681226
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|21677230|gb|BQ629581.1|BQ629581
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|17023206|gb|BM094240.1|BM094240
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|38192415|gb|CF921621.1|CF921621
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|11274510|gb|BF324863.1|BF324863
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15203336|gb|BI426104.1|BI426104
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|16106184|gb|BI893924.1|BI893924
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAACACGGTTGG                         ATCGTCAGAAAAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|18734388|gb|BM528153.1|BM528153
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|8670219|gb|BE191326.1|BE191326
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|254337988|gb|GR845451.1|GR845451
EST:     GTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: GTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|5677540|gb|AI938670.1|AI938670
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|120533479|gb|EH261612.1|EH261612
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|23732733|gb|BU764538.1|BU764538
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15204350|gb|BI427118.1|BI427118
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|58019572|gb|CX706314.1|CX706314
EST:     TGTGAAGACNTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACNTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|22524434|gb|BU083245.1|BU083245
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttagtattatggttacttttaattctttgacatgttattgctgtattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTCTTAGACCCATTGTACATGGTCAAACTTTGAAATACAACATGAAAGTGAG
                                             tattcttc  CT-rich tract
              ttacttttaattcttt  TA-rich tract