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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcttgttcttggttatgcaattttgttccttatagttttataatgtttcatagtatttatcttacaattatgcagATGTACAGCTTTACTGTGCATGGTTTTATAAGGAACAAGAATCAACCTTCTCAATGCATCCTGGTTGAATATACTTTTGGTCATAAAAATTTGCCAACAT

Basic information

species Glycine max
transcript GLYMA04G14280.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406034|gb|EV275849.1|EV275849
EST:     CAAGTCTCCCTCCTGCTACTGAATGTCTACTTTTAGGTCAAGACATAAAG                         ATGTACAGCTTTACTGTGCATGGTTTTATAAGGAACAAGAATCAACCTTCT
genomic: CAAGTCTCCCTCCTGCTACTGAATGTCTACTTTTAGGTCAAGACATAAAGgtttgctctt ... aattatgcagATGTACAGCTTTACTGTGCATGGTTTTATAAGGAACAAGAATCAACCTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttccttatagttttataatgtttcatagtatttatcttacaattatgcagATGTACAGCTTTACTGTGCATGGTTTTATAAGGAACAAGAATCAACCTTCTCAATGCATCCTGGTTGAATATACTTTTGGTCATAAAAATTTGCCAACAT
                                      atcttac  putative branch site (score: 3)
               ttttataatgtttcat  TA-rich tract