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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatttcttctacttttagtgctagcaatttagcgtaactgccatagtttcttgaatctttaaagtgtgttagttttacacatgttgagattttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACC

Basic information

species Glycine max
transcript GLYMA04G12950.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193583421|gb|FK540665.1|FK540665
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCC-AAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|9986080|gb|BE660188.1|BE660188
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|151411377|gb|EV281188.1|EV281188
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|151401177|gb|EV270991.1|EV270991
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|192322728|gb|FK014419.1|FK014419
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|209712170|gb|BW681376.1|BW681376
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|193444264|gb|FK409744.1|FK409744
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|17023914|gb|BM094948.1|BM094948
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|298180901|gb|HO022340.1|HO022340
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|213605925|gb|DB956639.1|DB956639
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|254328123|gb|GR835088.1|GR835088
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|16347945|gb|BI973540.1|BI973540
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|16347984|gb|BI973579.1|BI973579
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|19347320|gb|BM892200.1|BM892200
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|298173875|gb|HO017211.1|HO017211
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCAT
EST: gi|209727249|gb|BW663310.1|BW663310
EST:     TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTG                         ATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACG
genomic: TCTATTTTCTTCTCTCATGGCTTCAGATTCCAAAAAGGATTTCCCTGCTGgtatgtgcaa ... attttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtttcttgaatctttaaagtgtgttagttttacacatgttgagattttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACC
                                              ttttcgt  CT-rich tract
          aatctttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatatttcttctacttttagtgctagcaatttagcgtaactgccatagtttcttgaatctttaaagtgtgttagttttacacatgttgagattttcgtagATGACAAAGCTGGAACAGCAGAGAATAAAGCATCCAAAGATGAAACGTCATCTAAAGATTCTCCAGCAGCACAAAGAGCTACTACAGCTACTTCTGGACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT