1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttcaaattaccctcctccttgaaggattcatcaagcaaatgttaactatgtatacaattatctttagatttctagggctaatattgtagttttggtacagAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATATCCAGGGAATTCCTTGGGATAGCCTTAACATCACTAGAGAAAGATATC
species | Glycine max |
transcript | GLYMA04G12500.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCG AGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATEST: gi|15661728|gb|BI699099.1|BI699099
genomic: ATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCGgtttgtaaag ... tttggtacagAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGAT
EST: ATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCG AGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATEST: gi|192298146|gb|FG991666.1|FG991666
genomic: ATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCGgtttgtaaag ... tttggtacagAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGAT
EST: ATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCG AGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGAT
genomic: ATAGAGAAAGGGGTGGTGTAGAGTCTGACATAGATGATTATGATCACTCGgtttgtaaag ... tttggtacagAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGAT
ctatgtatacaattatctttagatttctagggctaatattgtagttttggtacagAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATATCCAGGGAATTCCTTGGGATAGCCTTAACATCACTAGAGAAAGATATC
ggctaat putative branch site (score: 3)
tatacaattatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaaattaccctcctccttgaaggattcatcaagcaaatgttaactatgtatacaattatctttagatttctagggctaatattgtagttttggtacagAGTGGTAAGGGAGTAGACACTACAGCTGCTCAGGCCAGAAGAGGACAGGATATCCAGGGAATTCCTTGGGATAGCCTTAACATCACTAGAGAAAGATATC
- - - - - -ctcctcc
- - - - - - - - - - - - - - - tcaagca
- - - - - - - - - - - - - - - - - - - - - - -ctatgta