1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ggatgttttctcttgatacctcatatttgttactcaatcagctatgccataataatattacactgacattttattgtatttatggattttgatggtgaagGTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGACAACTAAATATCGAGACTTAACTGCCCAGTCACAACTCACGTTCACT
species | Glycine max |
transcript | GLYMA04G10090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGCTTTGTACATTGATGGTGCACCGTTTGGCCTTCCAATGAGAACAAG GTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGACEST: gi|193423403|gb|FK390638.1|FK390638
genomic: TGTGCTTTGTACATTGATGGTGCACCGTTTGGCCTTCCAATGAGAACAAGgttattttat ... gatggtgaagGTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGAC
EST: TGTGCTTTGTACATTGATGGTGCACCGTTTGGCCTTCCAATGAGAACAAG GTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGAC
genomic: TGTGCTTTGTACATTGATGGTGCACCGTTTGGCCTTCCAATGAGAACAAGgttattttat ... gatggtgaagGTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGAC
gccataataatattacactgacattttattgtatttatggattttgatggtgaagGTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGACAACTAAATATCGAGACTTAACTGCCCAGTCACAACTCACGTTCACT
attttattgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatgttttctcttgatacctcatatttgttactcaatcagctatgccataataatattacactgacattttattgtatttatggattttgatggtgaagGTTGGAGTCCTCAGGACCATCATATTGTTGGAATGAGCTCATCACTTTGACAACTAAATATCGAGACTTAACTGCCCAGTCACAACTCACGTTCACT
ggatgtt
- - - - - - -tgatacc
- - - - - - - - - - - - - - - - - - - - -ctatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgaca