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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttttttttttttaattttaatgtttaggtaaattctctattgtattactcttcaaattaaagaatgttgagtttcatttccatgtcatttggcagAACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCATGTAGTTTG

Basic information

species Glycine max
transcript GLYMA04G10060.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213591600|gb|DB959974.1|DB959974
EST:     CTCATGACGTTAGGTTCTACAGTAATACTGGATTCTGTAGTTTCCATCAT                         AACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCA
genomic: CTCATGACGTTAGGTTCTACAGTAATACTGGATTCTGTAGTTTCCATCATgtgcgttttt ... catttggcagAACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCA
EST: gi|209717042|gb|BW668696.1|BW668696
EST:     CTCATGACGTTAGGTTCTACAGTAATACTGGATTCTGTAGTTTCCATCAT                         AACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCA
genomic: CTCATGACGTTAGGTTCTACAGTAATACTGGATTCTGTAGTTTCCATCATgtgcgttttt ... catttggcagAACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCA
EST: gi|209724812|gb|BW672595.1|BW672595
EST:     CTCATGACGTTAGGTTCTACAGTAATACTGGATTCTGTAGTTTCCATCAT                         AACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCA
genomic: CTCATGACGTTAGGTTCTACAGTAATACTGGATTCTGTAGTTTCCATCATgtgcgttttt ... catttggcagAACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattactcttcaaattaaagaatgttgagtttcatttccatgtcatttggcagAACCGGATGGGGGTCGGTCGATTACATTTGGTCACCTTAAATCTTTCACCATGTAGTTTG
          ttcaaattaaagaat  TA-rich tract