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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatactaatcatcgcatttcttaattttcgcgtaaattaagtagtagcatttgatgtcgcttaattcagcttcttcttctccccagGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGTTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAG

Basic information

species Glycine max
transcript GLYMA04G09130.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23063730|gb|BU578612.1|BU578612
EST:     ACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCTACCTCCGTGAA                         GAAACGAGTAGTGTCGGGAGTTCTTCTTTCGGGTTCAATTCACCTCGGAAA
genomic: ACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCTACCTCCGTGAAgtaatactaa ... ttctccccagGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGTTCAATTCACCTCGGAAA
EST: gi|6482637|gb|AW201882.1|AW201882
EST:     ACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCTACCTCCGTGAA                         GAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGTTCAATTCACCTCGGAAA
genomic: ACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCTACCTCCGTGAAgtaatactaa ... ttctccccagGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGTTCAATTCACCTCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaattaagtagtagcatttgatgtcgcttaattcagcttcttcttctccccagGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGTTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAG
                           gcttaat  putative branch site (score: 4)
                                 ttcagcttcttcttct  CT-rich tract
                             ttaattca  TA-rich tract