Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcactttagcttctctgtatgaattttttttaatgagaatactttatcacataaccatgctatatctaaacaataaacatcttacatgttttcttcctcttctctctgtctctctaattggcaaaacctaattttgtaaatgctagGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGCCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTT

Basic information

species Glycine max
transcript GLYMA04G08670.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193322270|gb|FK288226.1|FK288226
EST:     CCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAGTT                         GTACTATGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGT
genomic: CCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAGTTgtaagcactt ... taaatgctagGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcctcttctctctgtctctctaattggcaaaacctaattttgtaaatgctagGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGCCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTT
                                  acctaat  putative branch site (score: 3)
                                     taattttgtaaat  TA-rich tract