1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gcattatatttcggtttgatttgatgcttttgcttagatagttgtattgttatttttgctttctatgaggttctttaatgataaaatctatccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCT
species | Glycine max |
transcript | GLYMA04G08530.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTTTATGCTGTTTCGCTTCGATGTTTTGCATCACCTAGAAAGTTGAAG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|23725673|gb|BU760799.1|BU760799
genomic: ATTTTTATGCTGTTTCGCTTCGATGTTTTGCATCACCTAGAAAGTTGAAGgtgaacattt ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: ATTTTTATGCTGTTTCGCTTCGATGTTTTGCATCACCTAGAAAGTTGAAG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAEST: gi|192315597|gb|FK007425.1|FK007425
genomic: ATTTTTATGCTGTTTCGCTTCGATGTTTTGCATCACCTAGAAAGTTGAAGgtgaacattt ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
EST: ATTTTTATGCTGTTTCGCTTCGATGTTTTGCATCACCTAGAAAGTTGAAG GTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
genomic: ATTTTTATGCTGTTTCGCTTCGATGTTTTGCATCACCTAGAAAGTTGAAGgtgaacattt ... tccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAA
attgttatttttgctttctatgaggttctttaatgataaaatctatccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCT
ctttaat putative branch site (score: 4)
tctatcc putative PPT
ttctttaatgataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattatatttcggtttgatttgatgcttttgcttagatagttgtattgttatttttgctttctatgaggttctttaatgataaaatctatccattgtagGTTCCATGTCGATAAAATGTCTTCAGCCCATGTCTATGTCAGGTTGCACAAAGGCCAGACCATCGATGACATGAGTGAGGGTTTACTGGAAGACTGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA