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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacaatctcttttatgttttcaacaccctcaaacctttgagctaatggttgttttcagtttttggtggatataatgtttgatgttctgtaaatgagcttcaatatggtgttttttaacagATGGAACCTTGAGCACAGTGGAAACATTGGCATCTACTGCTATTTGTGGAGTTATTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGC

Basic information

species Glycine max
transcript GLYMA04G07390.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07390.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 2
gtaaaacaatctcttttatgttttcaacaccctcaaacctttgagctaatggttgttttcagtttttggtggatataatgtttgatgttctgtaaatgagcttcaatatggtgttttttaacagATGGAACCTTGAGCACAGTGGAAACATTGGCATCTACTGCTATTTGTGGAGTTATTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGC
                        | | | | | ||| || ||   | |    | ||  |  | ||   |    ||   || ||||  | | | | |||   |  | |   |  |||||   ||||||   ||||||| ||||  ||||  | || ||||||||||| |||||| | || |||||||| || ||||| || |||||||||||||||||||||||
-----------------gcaagcgccaaatcat-aaatctatgga-tgagaacttttcaccatcttcttttcccatgg-gtatgattgtttttca-tga---ttgaaacttttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggatataatgtttgatgttctgtaaatgagcttcaatatggtgttttttaacagATGGAACCTTGAGCACAGTGGAAACATTGGCATCTACTGCTATTTGTGGAGTTATTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGC
          gtttgat  putative branch site (score: 5)
                                          tgtttttt  putative PPT
                                          tgttttttaa  TA-rich tract