1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggttatttgtttgtgaattgtgagtttctgaattttgttgaatctgaatggatgtttttttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCATGTTCGTGAATATGATGTTCGCAAATTGATGCAAGTCAAGGAGCCAAT
species | Glycine max |
transcript | GLYMA04G06310.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAG GACACTTTGAGAGGCCTCCCTATGATCATAAEST: gi|15286129|gb|BI470020.1|BI470020
genomic: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGgttggttatt ... tttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAA
EST: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAG GACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCEST: gi|18041375|gb|BM309669.1|BM309669
genomic: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGgttggttatt ... tttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATC
EST: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAG GACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCEST: gi|298175729|gb|HO018326.1|HO018326
genomic: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGgttggttatt ... tttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATC
EST: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAG GACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCEST: gi|20075977|gb|BQ094760.1|BQ094760
genomic: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGgttggttatt ... tttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATC
EST: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAG GACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCEST: gi|193657805|gb|FK601146.1|FK601146
genomic: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGgttggttatt ... tttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATC
EST: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAG GACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCEST: gi|192305673|gb|FG994355.1|FG994355
genomic: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGgttggttatt ... tttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATC
EST: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAG GACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATC
genomic: TCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGgttggttatt ... tttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATC
tgaattgtgagtttctgaattttgttgaatctgaatggatgtttttttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCATGTTCGTGAATATGATGTTCGCAAATTGATGCAAGTCAAGGAGCCAAT
ttttgat putative branch site (score: 4)
tgttttttt CT-rich tract
atgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttatttgtttgtgaattgtgagtttctgaattttgttgaatctgaatggatgtttttttgatgtagGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCATGTTCGTGAATATGATGTTCGCAAATTGATGCAAGTCAAGGAGCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG